On a similar subject, I replaced the stock brackets with Carbon Fibre parts. In the 'normal' position, my reservoir hit the fairing too. I had to rotate the CF bracket where it mounts to the Brembo levers, to the maximum anti-clockwise travel point (towards the triple clamp) and then other tweaks at the reservoir as well, to get clearance. In the original and CF set-up there is barely 1 mm of clearance to the fairing anyway.
Having made quite a few mods to my bike, the lack of information is annoying, specifically Ducati's lack of technical manuals etc. (If I can afford the AUD$30K bike, I am sure I can afford the workshop manual)
I am stuck trying to fit the CF air ducts as there is no bend in the part, whereas the plastic duct bends into place with no effort. It's just as well I have loads of patience, although that was tested to the max when trying to fit a new screen.