Looked at a lot of .... tonight, NOLA. All the connectors except a couple looked good and even those weren't too bad. Pulled the battery and put in a new one and found that a washer was missing on the tray holding the battery tray, which would allow the battery to bounce around (along with the fuses). I've never taken the tray off, but it must have been pulled at some point. Still wonky, though, but could perhaps have led to a connector getting pinched or sending intermittent data to the ECU?
13 - Keep in mind that by the time you and most people get to my kind of mileage Ducati will have already amassed a database of solutions to what are/were puzzling problems. Ducati WILL figure out what's going on with my bike. I'm just the experimental rat at this point.
Regarding the engine--the damage was most likely caused by the airbox leak that resulted from an inattentively installed airbox seal and not caused by a manufacturing defect. At 15k my valves were in spec and hell, other than the exhaust losing insulation and loosening up and a fork seal leak (I paid for that, was kind of hard to refute that all my offroading didn't have an efect), the bike is magnificent. No issues with wheel or steering bearings, no bent rims, no issues with suspension linkages or cracked 'frame'. And for as hard as I am on my brakes, my rotors are still in spec.
For everything I've put my bike through, I'd say that you all should be VERY confident that the Panigale will make an excellent long-term bike. Even the fookin paint looks crazy good!
So my advice for any new or current Panigale owner:
1) get new footpegs
2) get an Oberon or similar clutch slave
3) ride without worry--the 1199 is by no means fragile
4) get an extended warranty JUST in case.