I usually count four different ECUs.
The best one you can get is Europa.
Then, that would be US, although because of the different lightning scheme and the complex electrical circuit of the Panigale, problems like the one you had will be common. Also, will be less fast, hence the disappointing results you can have in the U.S.A.
Then, France, limited to 106bhp, but sound is as hard than the Europa ECU.
Then, Japan, which is also limited to 100 something - if I recall correctly - and also has stricter laws against noise and ecology.
All ECUs are physically the same, the change being all software. But you can't exchange software easily since physical changes are also made to the bikes depending on the countries (U.S.A. and Japan).
In France, bike is the same than Europa, just the software change which we usually upgrade to Europa software without any issues.