This is a V4 section discussing V4's. There is no rapid or auto tuner and if you use two widebands, what software are you tuning with?
Auto Tuners have issues with QS's because of spark cut. The auto tuner sees regular shifting or race shifting as a rich area and tries to correct. Pretty soon you have -40% and massive flat spots while riding that need to be corrected.
I wouldn't use PC auto tuner they are ..... Rapid bike and Bazzaz much better but when used to tune with them I used to turn all rider aids to stop confusion but even then you have to be carful as they start leaning out on small throttle openings